The add-on is designed to work as it should, even if the add-on does not exist (for example, you passed your scene to a colleague or uploaded to a render farm) What you propose is a useful feature, of course, but within the framework of the add-on and in accordance with this goal can not be implemented, unfortunately.
I love it but entering edit mode in the isolated mode defeats the purpose for me, most of the time i do edits on my models based on my whole scene. is there a way to prevent the edit mode from hiding the whole scene?